Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797162.1_cds_XP_016453764.1_4742
CDS Infomation

[gene=LOC107778084] [db_xref=GeneID:107778084] [protein=probable pectate lyase 13 isoform X2] [protein_id=XP_016453764.1] [location=join(18614..18744,19462..20164,20677..20868,21768..21973,23862..24102)] [gbkey=CDS]
Sequence

ATGCTTTCTGCTATTTGCATTCTCTTATTCTGTTTCTTAATCTCATTCTTCCCACTAATT
ACAAATTCCCTTAATCTCACCCTCCCCTATCAACACCCTTACCCTGAAGCTGTGGTTCAA
GAACTACAAAGGGTGAATGAGTCCATATCAAGAAGACAACTGTTAGACACTACCATAAAT
GCACAATGTCAAACAGGGAACCCAATAGACGATTGCTGGCGCTGCGATCCAAACTGGGCC
AGCAATCGTCAACGTTTAGCAGATTGCGCCATAGGCTTCGGCCAGGGCACAATCGGAGGA
AGAAACGGTAAGATTTACGTCGTCACTGATTCTTCAGATAGAGACACCGTAAATCCAACG
CCGGGGACTCTCCGGCATGCCGTAATCCAAGACGAACCGCTCTGGATAATTTTCTCAGCC
GACATGTTTATTAAATTAAAACATGAACTCATCGTAAATAGTTATAAAACAATCGACGGT
CGTGGTGCAAAAGTACACATTACAGGAAATGGATGTATAACGTTACAATATATTAGTAAT
GTTATTATACACAATGTGCATATTTACAATTGTCGTCCTTCGGGAAATACTAATATACGT
TCGACCCCGACTCACGTTGGACATAGAGGAAGATCGGACGGTGATGGAATTTCTATATTT
GGATCGCGAAATATATGGATTGATCATTGTGCATTGTCGCATTGTACCGACGGCTTAATT
GATGCTATCATGGGGTCCACTGCGATTACTATATCTAACAACTATTTCACTCACCATGAT
GAAGTTATGCTCTTGGGACATGATGATAGATATTTGCCTGACTCCGGAATGCAGGTGACA
ATAGCATTCAATCATTTTGGAGTGGGATTAGTACAGAGAATGCCAAGGTGTAGAAGAGGA
TATATACATGTAGTGAACAATGATTTTACAGAGTGGCAAATGTATGCAATTGGAGGAAGT
GCTAATCCTACTATTAATAGTCAGGGCAATCGTTATATGGCGCCAGTGGATCCAAATGCA
AAGGAGGTGACAAAGCGCGTGGACACAGACGAGGGAGAGTGGAGTGACTGGAACTGGAGA
ACTGATGGGGACGTAATGGTAAATGGAGCATTTTTCGTGCCATCAGGTGAAGGGCTGAGC
AACCAATACGCGAAGGCCTCGAGCGTGGAGCCCAAATCCGCTGTTCTTATTGATCAACTC
ACCCTCAACGCCGGTGTTTTTGGTGGCCCGAGGGATAATAGTATTAGCATATCATATGGA
GGTGGGACCACCACCGGAGCTAGCGGGAGCGGCGGTGCCGGGTCCACTGGCGGCGGCGAT
AGTGACTTCTATGGAATGATATTTGGGAGCGGCGCAAAATTATCACCATCTACAACCACT
ACTATTTTATTGTCTCATTTAATTATTTTAGTTTTGTACATTACCACCAACCATTGTGGG
CAATTATCATTACAATTATTACACTTACTATAG

Peptide Sequence

PEP ID

XP_016453764.1
PEP Infomation

PREDICTED: probable pectate lyase 13 isoform X2 [Nicotiana tabacum]
Sequence

MLSAICILLFCFLISFFPLITNSLNLTLPYQHPYPEAVVQELQRVNESISRRQLLDTTIN
AQCQTGNPIDDCWRCDPNWASNRQRLADCAIGFGQGTIGGRNGKIYVVTDSSDRDTVNPT
PGTLRHAVIQDEPLWIIFSADMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQYISN
VIIHNVHIYNCRPSGNTNIRSTPTHVGHRGRSDGDGISIFGSRNIWIDHCALSHCTDGLI
DAIMGSTAITISNNYFTHHDEVMLLGHDDRYLPDSGMQVTIAFNHFGVGLVQRMPRCRRG
YIHVVNNDFTEWQMYAIGGSANPTINSQGNRYMAPVDPNAKEVTKRVDTDEGEWSDWNWR
TDGDVMVNGAFFVPSGEGLSNQYAKASSVEPKSAVLIDQLTLNAGVFGGPRDNSISISYG
GGTTTGASGSGGAGSTGGGDSDFYGMIFGSGAKLSPSTTTTILLSHLIILVLYITTNHCG
QLSLQLLHLL

Transcript Sequence

Gene sequence data has not been registered.